Scientists studied a special type of fish to understand how stomach acid helps our bodies digest food and use energy. They found that without stomach acid, the fish couldn’t break down protein as well and used less energy after eating, even though they still grew normally. Interestingly, common heartburn medications that reduce stomach acid seemed to harm growth in both normal and acid-free fish, suggesting these drugs might have unexpected side effects. This research gives us the first direct proof of how important stomach acid is for proper digestion and body health.

The Quick Take

  • What they studied: How stomach acid affects the way our bodies digest food, use energy, and build muscle and bone
  • Who participated: A special breed of fish (Astyanax mexicanus) that scientists genetically modified to produce no stomach acid, compared with normal fish that produce stomach acid naturally
  • Key finding: Fish without stomach acid couldn’t digest protein as efficiently and burned less energy after meals, but surprisingly still grew to normal size. They also had less muscle and bone minerals but more fat in their bodies.
  • What it means for you: Stomach acid plays a bigger role in how your body processes food than previously thought. If you take medications that reduce stomach acid, you might want to discuss this with your doctor, as it could affect how well your body absorbs important nutrients.

The Research Details

Researchers used advanced genetic editing to create fish that couldn’t make stomach acid by removing a specific gene. They then compared these acid-free fish with normal fish to see what differences appeared. They measured how much the fish grew, how much energy they used after eating, how much protein they could digest, and what their bodies were made of (muscle, fat, minerals). This approach was better than previous studies because it directly removed stomach acid rather than using medications that might have other effects.

The scientists carefully tracked everything the fish ate and produced, measured oxygen use (which shows energy burning), and analyzed the fish’s bodies after the study ended. By using this direct genetic approach instead of drugs or diet changes, they could be more confident that any differences were truly caused by the lack of stomach acid and not by other factors.

Previous research used indirect methods like special diets or heartburn medications to study stomach acid, but these methods can cause confusion because they might affect the body in other ways too. This study is important because it directly removes the ability to make stomach acid, giving clearer answers about what stomach acid actually does. Understanding this helps doctors and scientists know whether medications that reduce stomach acid might cause problems we didn’t know about.

This study is strong because it used modern genetic technology to directly test the role of stomach acid rather than using indirect methods. The researchers measured multiple important outcomes (growth, energy use, nutrient digestion, body composition) which gives a complete picture. However, the study was done in fish, not humans, so we need to be careful about assuming the same things happen in people. The study also found that common heartburn medications had unexpected harmful effects, which suggests previous research using these drugs might have given misleading results.

What the Results Show

The most surprising finding was that fish without stomach acid grew to normal size just like regular fish. Scientists expected that without stomach acid, the fish would be smaller or weaker, but this didn’t happen. However, the fish without stomach acid did show important differences in how they processed food and used energy.

After eating, normal fish burned more oxygen (used more energy) than fish without stomach acid. This process, called the energy cost of digestion, was significantly reduced in the acid-free fish. Additionally, fish without stomach acid excreted more nitrogen in their waste, which means they weren’t digesting and using protein as efficiently as normal fish.

When scientists looked at what the fish’s bodies were made of, they found major differences. Fish without stomach acid had less protein, calcium, phosphorus, and magnesium in their bodies—all important for strong muscles and bones. At the same time, these fish had more fat stored in their bodies. This suggests that without stomach acid, the body can’t properly absorb and use minerals and protein, even though overall growth appears normal.

An important secondary finding involved heartburn medications called proton-pump inhibitors. When researchers gave these medications to both normal fish and acid-free fish, both groups showed reduced growth. This was unexpected and concerning because it suggests these common medications might have harmful effects beyond just reducing stomach acid. This finding is important because millions of people take these medications, and it raises questions about whether they might be causing problems we haven’t noticed.

This research provides much clearer answers than previous studies because it directly removes stomach acid rather than using medications or diet changes. Earlier studies suggested stomach acid was important for digestion, but they couldn’t prove it directly. This study confirms those suspicions and adds new information: stomach acid is crucial for properly digesting protein and absorbing minerals, even if overall growth can still happen without it. The finding about heartburn medications contradicts what we might expect from simply reducing stomach acid, suggesting these drugs do other things in the body that we didn’t fully understand.

This study was conducted in fish, not humans, so we must be careful about assuming the exact same things happen in people. Fish have different digestive systems than humans in some ways. The study didn’t specify exactly how many fish were used in each group, which makes it harder to judge how reliable the results are. Additionally, the research only looked at short-term effects; we don’t know what would happen to fish (or people) over many years without stomach acid. The study also didn’t examine all possible effects of lacking stomach acid, so there might be other important impacts that weren’t measured.

The Bottom Line

Based on this research, people taking heartburn medications should discuss with their doctor whether they really need them and for how long, since these drugs might affect nutrient absorption and body composition. If you take these medications long-term, ask your doctor about monitoring your mineral and protein levels. However, this is preliminary evidence from fish studies, so don’t make changes to your medications without professional guidance. People with low stomach acid should ensure they’re getting enough calcium, phosphorus, magnesium, and protein through their diet or supplements.

This research matters most for people who take heartburn medications regularly, especially for long periods. It’s also relevant for people with naturally low stomach acid (a condition called achlorhydria) and for doctors prescribing these medications. Parents of children taking heartburn medications should be aware of these potential effects. However, people who occasionally take heartburn medication for specific situations probably don’t need to worry based on this single study.

Changes in how your body absorbs minerals and builds muscle happen gradually over weeks to months, not overnight. If you’re concerned about stomach acid medication effects, improvements in mineral and protein absorption might take several weeks to become noticeable after stopping the medication. However, you shouldn’t stop medications without talking to your doctor first.

Want to Apply This Research?

  • If you take heartburn medications regularly, track your energy levels and appetite weekly using a simple 1-10 scale. Also monitor any symptoms of mineral deficiency like muscle weakness, bone pain, or fatigue. Note any changes in body composition or how your clothes fit over 4-8 week periods.
  • If you take heartburn medications, use the app to set a reminder to discuss with your doctor whether you still need them and at what dose. Log your meals to ensure you’re getting adequate protein, calcium, and magnesium. If your doctor recommends continuing the medication, use the app to track whether you need to increase these nutrients in your diet.
  • Create a monthly check-in to assess energy levels, muscle strength, and overall wellness. Track any new symptoms that might indicate mineral deficiency. If you make changes to heartburn medication use, monitor for 8-12 weeks to see if you notice improvements in energy, digestion, or body composition. Share this data with your healthcare provider at regular appointments.

This research was conducted in fish and has not been tested in humans. The findings suggest potential concerns about long-term use of heartburn medications, but this is preliminary evidence. Do not stop or change any medications without consulting your healthcare provider. If you take heartburn medications regularly and have concerns about nutrient absorption or body composition changes, discuss these findings with your doctor. This information is educational and should not replace professional medical advice. People with diagnosed acid reflux or GERD should continue their prescribed treatment unless directed otherwise by their physician.

This research translation is published by Gram Research, the science division of Gram, an AI-powered nutrition tracking app.

Source: Lack of gastric acidification reduces postprandial energy expenditure and protein digestion but not growth in Astyanax mexicanus.The Journal of experimental biology (2026). PubMed 41772966 | DOI